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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129649352_129650272_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129649352 - 129650272
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACAAG
5'SS Class:
major
3'SS Sequence:
TTTTAATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTCTTTTAATT
Flanking Amino Acid:
TDRLDTIRIKGKRALFTNFD
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
67.3
39.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.8
78
40.1
Minor 5ss
32.6
-2
2.9
38.7
46.6
Minor BPS
70.3
0.72
1.2
80.3
36.2

Associated Gene:

Gene:
CA13
Ensembl Gene ID:
ENSAPLG00000016183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016897
129641095 - 129652276
11182