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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129650429_129652162_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129650429 - 129652162
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAATTT
5'SS Class:
major
3'SS Sequence:
CTCTTAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTCTTAATT
Flanking Amino Acid:
REPISVCSEQLAKFRSLLST
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1
71.1
35.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.9
0.67
0.9
73.9
34.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
76.3
0.9
1.1
84.73
36.1

Associated Gene:

Gene:
CA13
Ensembl Gene ID:
ENSAPLG00000016183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016897
129641095 - 129652276
11182