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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129672951_129674207_F

Intron Information:

Intron Rank:
129112
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
129672951 - 129674207
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTGG
5'SS Class:
major
3'SS Sequence:
AATAAAAGAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTCTCATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
65.8
42.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
48.6
-0
1.1
38.8
42.4
Minor 5ss
39.7
-1.2
2.8
49.7
46.6
Minor BPS
66.2
0.5
1.6
72.1
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019456
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048007
129672440 - 129674407
1968