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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129698627_129702023_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129698627 - 129702023
Intron Length:
3397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTT
5'SS Class:
major
3'SS Sequence:
TTATCAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AGATTATCAATT
Flanking Amino Acid:
VVFDDSFDRSVLRGGPLTGA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
78.8
38.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
77.7
0.62
0.9
71.3
38.2
Minor 5ss
45.2
-0.5
3
65.1
46.2
Minor BPS
48.8
-0
1.7
65.56
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042433
129698248 - 129711083
12836