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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129708301_129708877_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129708301 - 129708877
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CCACCTTTTATT
Flanking Amino Acid:
REPIEVSPDQMAKLRSLSKN
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
49.5
0.04
1.6
61.4
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042433
129698248 - 129711083
12836