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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129708909_129709502_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129708909 - 129709502
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
CTCTTGTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTAACGTACCA
Flanking Amino Acid:
MAKLRSLSKNVCCPGFWGYN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
66.9
38.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.1
0.59
0.8
71.4
33.1
Minor 5ss
28.5
-2.5
2.7
29.9
36.3
Minor BPS
46.7
-0.2
2.4
69.02
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042433
129698248 - 129711083
12836