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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129733821_129739542_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129733821 - 129739542
Intron Length:
5722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTATCAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AGATTATCAATT
Flanking Amino Acid:
IVFDDSFDRSVLRGGPLPGV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
77.7
0.62
0.9
71.3
38.2
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
48.8
-0
1.7
65.56
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003513
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021638
129732752 - 129745605
12854
ENSAPLT00000003588
129732752 - 129746178
13427
ENSAPLT00000002436
129732752 - 129745605
12854