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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129739662_129740445_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129739662 - 129740445
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATCTCTTTATAT
Flanking Amino Acid:
VVNGVRYAGELHLLHWNPKY
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
59.6
0.38
1.7
75.29
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003513
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021638
129732752 - 129745605
12854
ENSAPLT00000003588
129732752 - 129746178
13427
ENSAPLT00000002436
129732752 - 129745605
12854