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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129740539_129741463_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129740539 - 129741463
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
GIAVLAIFLQVGKTPKPEMK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
89.3
0.88
0.6
84
24.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003513
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003588
129732752 - 129746178
13427
ENSAPLT00000002436
129732752 - 129745605
12854
ENSAPLT00000021638
129732752 - 129745605
12854