Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129741874_129745015_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129741874 - 129745015

Intron Length:

3142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACTTC

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TCTGTCATGACA

Flanking Amino Acid:

REPIIVSSDQMAKLRSLSKN

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.6

35.3

Major BPS

72.5

0.56

1.2

39.9

Major PPT

79.5

0.66

0.8

73.5

31.5

Minor 5ss

47.8

-0.2

2.9

67.4

Minor BPS

53.1

0.09

1.7

66.48

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021638

129732752 - 129745605

12854

ENSAPLT00000003588

129732752 - 129746178

13427

ENSAPLT00000002436

129732752 - 129745605

12854