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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129773102_129776637_R

Intron Information:

Intron Rank:
130111
Intron Class:
major
Intron Phase:
Intron Coordinates:
129773102 - 129776637
Intron Length:
3536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
TATCCACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.9
39.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.6
0.62
0.9
70.5
34.7
Minor 5ss
36.9
-1.5
3.2
55.9
42.3
Minor BPS
47.6
-0.1
2.2
73.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025736
129772063 - 129778391
6329