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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129776818_129778118_R

Intron Information:

Intron Rank:
130112
Intron Class:
major
Intron Phase:
Intron Coordinates:
129776818 - 129778118
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTAA
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
ATAAATTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.9
33.6
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
81.9
0.72
0.8
80.3
31.8
Minor 5ss
43.8
-0.7
2.8
54.8
49.4
Minor BPS
53.3
0.1
1.5
63.17
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025736
129772063 - 129778391
6329