Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129805452_129807228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129805452 - 129807228

Intron Length:

1777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTATTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

CTTTCCTTATTG

Flanking Amino Acid:

GLAVVGIFMKGKQASFTNFD

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

1.1

76.1

35.9

Major BPS

78.8

0.72

67.9

40.1

Major PPT

81.5

0.71

0.7

77.6

29.5

Minor 5ss

35.9

-1.6

2.6

40.9

45.4

Minor BPS

67.7

0.42

1.7

70.91

42.8

Associated Gene:

Gene:

CA2

Ensembl Gene ID:

ENSAPLG00000003211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017441

129792344 - 129809954

17611