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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129806281_129807228_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129806281 - 129807228
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATTG
Flanking Amino Acid:
VDALNSIQTKGKQASFTNFD
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.5
0.71
0.7
77.6
29.5
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
67.7
0.42
1.7
70.91
42.8

Associated Gene:

Gene:
CA2
Ensembl Gene ID:
ENSAPLG00000003211
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042724
129792344 - 129809954
17611
ENSAPLT00000003310
129793067 - 129809954
16888