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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12981975_12982277_R

Intron Information:

Intron Rank:
140697
Intron Class:
major
Intron Phase:
Intron Coordinates:
12981975 - 12982277
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATTTTGGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
66.8
0.38
1.2
67.2
43
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
44.2
-0.3
2.7
73.16
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028196
12981687 - 13038207
56521
ENSAPLT00000019408
12981687 - 13094174
112488