About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129831673_129864702_R

Intron Information:

Intron Rank:
144236
Intron Class:
major
Intron Phase:
Intron Coordinates:
129831673 - 129864702
Intron Length:
33030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ACATGTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTCCCTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.4
32.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69.8
0.44
0.9
66.6
39.8
Minor 5ss
35.9
-1.6
2.7
43.9
43.8
Minor BPS
49.5
0.05
2.1
72.54
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038383
129831249 - 129865658
34410