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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129890425_129900954_R

Intron Information:

Intron Rank:
135484
Intron Class:
major
Intron Phase:
Intron Coordinates:
129890425 - 129900954
Intron Length:
10530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.8
0.83
0.7
81.6
30.3
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
59
0.36
1.5
78.6
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020325
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019671
129890039 - 129905738
15700