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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12995230_13038101_R

Intron Information:

Intron Rank:
140708
Intron Class:
major
Intron Phase:
Intron Coordinates:
12995230 - 13038101
Intron Length:
42872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAG
U12 Branch Point Sequence:
TTTCTCTGGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
44.9
-0.3
1.6
38.4
41.7
Major PPT
70.4
0.46
1
68.9
37.2
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
59.7
0.3
1.4
72.07
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035645
12994924 - 13165677
170754
ENSAPLT00000028196
12981687 - 13038207
56521
ENSAPLT00000037323
12995163 - 13039265
44103