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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129965345_129970978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129965345 - 129970978
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
AATCTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCCTTGAAT
Flanking Amino Acid:
VNLAQCETLEDLKLHLQTTD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
1
67.9
41.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
77.7
0.95
1.3
88.47
36.5

Associated Gene:

Gene:
ATP6V0D2
Ensembl Gene ID:
ENSAPLG00000003128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003201
129964897 - 129982526
17630