Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129975044_129976867_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129975044 - 129976867

Intron Length:

1824

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TAGCATTTAAAA

Flanking Amino Acid:

IEIMRNKLYKSYLEAFYKFC

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.2

1.14

0.7

86.9

30.2

Major BPS

87.3

0.93

0.8

36.5

Major PPT

90.8

0.92

0.6

88.2

21.6

Minor 5ss

32.5

-2

3.9

50.4

Minor BPS

51.4

0.04

1.6

60.56

38.7

Associated Gene:

Gene:

ATP6V0D2

Ensembl Gene ID:

ENSAPLG00000003128

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003201

129964897 - 129982526

17630