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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129976946_129980050_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129976946 - 129980050
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGCATTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCCTTATTT
Flanking Amino Acid:
TAEIMRPILEFEADRRAFII
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.7
0.35
1.2
69.1
41.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
76.5
0.91
1.5
89.27
35.4

Associated Gene:

Gene:
ATP6V0D2
Ensembl Gene ID:
ENSAPLG00000003128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003201
129964897 - 129982526
17630