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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130028281_130030590_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130028281 - 130030590
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTTATATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
SNPKWDEQLTVNVTPQTTLE
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.2
0.68
0.9
75
38.5
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
WWP1
Ensembl Gene ID:
ENSAPLG00000002071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002459
130015047 - 130061979
46933