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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130040499_130042363_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130040499 - 130042363
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCACCTTGACT
Flanking Amino Acid:
GNASTEPLPPGWEQRKDPHG
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
59.7
45.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.5
0.64
1
79.6
32.8
Minor 5ss
37.7
-1.4
3.1
40.1
46
Minor BPS
78.4
0.98
1.2
88.25
36.9

Associated Gene:

Gene:
WWP1
Ensembl Gene ID:
ENSAPLG00000002071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002459
130015047 - 130061979
46933