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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130047547_130048627_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130047547 - 130048627
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TATTCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTCCCTTACA
Flanking Amino Acid:
FNDPRTGKSSVNKGPQIAYE
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.3
40.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.9
0.76
0.8
77.2
31.2
Minor 5ss
34
-1.8
3.2
40.9
45.3
Minor BPS
62.5
0.39
2
77.67
38.3

Associated Gene:

Gene:
WWP1
Ensembl Gene ID:
ENSAPLG00000002071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002459
130015047 - 130061979
46933