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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130049012_130067665_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130049012 - 130067665
Intron Length:
18654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTAAGTTAACA
Flanking Amino Acid:
YPAHTEEDKQSSLTSLPHFG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
57.5
0.23
2.3
77.35
39.2

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028989
130048932 - 130079114
30183