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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130058674_130059925_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130058674 - 130059925
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TCTCTATGCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACTAAGT
Flanking Amino Acid:
NSKQIIWFWQFVKETDNEVR
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.4
0.42
0.9
61.9
38.9
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
52
0.14
2.2
81.5
39.9

Associated Gene:

Gene:
WWP1
Ensembl Gene ID:
ENSAPLG00000002071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002459
130015047 - 130061979
46933