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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130060439_130061879_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130060439 - 130061879
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CTTAACACAGTT
Flanking Amino Acid:
KETWLPRSHTCFNRLDLPPY
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
40.1
-0.6
2
59.25
43.8

Associated Gene:

Gene:
WWP1
Ensembl Gene ID:
ENSAPLG00000002071
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002459
130015047 - 130061979
46933