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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130065667_130067665_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130065667 - 130067665
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATGT
Flanking Amino Acid:
YPAHTEEDKQVQKEALELLN
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.1
0.7
0.9
78.2
39.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
49.7
0.06
2
73.5
43.4

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000927
130065530 - 130079114
13585