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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130066813_130067665_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
130066813 - 130067665
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGAATGTCCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATGTTCTGAATG
Flanking Amino Acid:
YPAHTEEDKQL*
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
59.4
0.21
1
50.1
43.5
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
60.2
0.18
1.5
62.1
40.3

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036260
130066688 - 130078918
12231