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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130067800_130070273_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130067800 - 130070273
Intron Length:
2474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTCAAA
Flanking Amino Acid:
ALRYFHMAEEADPNFYSKNL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.9
0.65
0.9
73.8
35.8
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
51.2
0.03
2.1
71.09
40.4

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040847
130067096 - 130078918
11823
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585