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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130070305_130071432_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130070305 - 130071432
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCATTTTAAAG
Flanking Amino Acid:
ATPPTSTYQEALRYFHMAEE
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.8
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
28
-2.5
3.5
37.9
46.9
Minor BPS
50.8
-0.1
1.5
52.18
42.9

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040847
130067096 - 130078918
11823
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585