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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130071521_130073535_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130071521 - 130073535
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTAATCAATG
Flanking Amino Acid:
DATSIHLMGIWCYSFAEMPW
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
66.6
39.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.8
0.69
0.8
72.7
37.6
Minor 5ss
37.2
-1.4
3.3
46.9
44
Minor BPS
47.7
-0.3
2
59.15
42.2

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040847
130067096 - 130078918
11823
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585