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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130074387_130075036_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130074387 - 130075036
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
KNESNFAAHKWYAICISDVG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.5
0.62
0.9
69.9
39.4
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585
ENSAPLT00000040847
130067096 - 130078918
11823