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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130076575_130078506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130076575 - 130078506
Intron Length:
1932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTTTCCACAACT
Flanking Amino Acid:
GFAEVHASFKVAEVIEQADY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
75.8
34.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
92.1
0.95
0.5
92.3
18.1
Minor 5ss
41.4
-1
3.3
58.9
45.9
Minor BPS
65.9
0.58
1.9
86.75
38.3

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040847
130067096 - 130078918
11823
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585