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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130078619_130078786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130078619 - 130078786
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGGG
5'SS Class:
major
3'SS Sequence:
TGGTCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTTGATTAACG
Flanking Amino Acid:
RGRGGLGRSQVLRKSPKRGV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
58
47.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.6
0.42
1
62.2
39.8
Minor 5ss
36.2
-1.6
3.4
49.2
47.1
Minor BPS
51.1
-0.1
2.1
61.23
46.2

Associated Gene:

Gene:
RMDN1
Ensembl Gene ID:
ENSAPLG00000000614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040847
130067096 - 130078918
11823
ENSAPLT00000036260
130066688 - 130078918
12231
ENSAPLT00000028989
130048932 - 130079114
30183
ENSAPLT00000000927
130065530 - 130079114
13585