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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130087283_130087870_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130087283 - 130087870
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGCGTAAAGT
Flanking Amino Acid:
QNTSGQQWYEVDRTEKIKNS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.8
0.9
0.7
85.1
28.4
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
46.5
-0.1
2.6
75
47.8

Associated Gene:

Gene:
CPNE3
Ensembl Gene ID:
ENSAPLG00000015617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016308
130087049 - 130108012
20964