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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130089062_130089510_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130089062 - 130089510
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTACCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTTTTACCT
Flanking Amino Acid:
GRPAGKGSITITAEEVKDNR
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.9
43.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.4
0.73
0.8
77.9
35.6
Minor 5ss
31.8
-2.1
3.1
40.3
45.3
Minor BPS
69.7
0.7
1.5
85.39
35.1

Associated Gene:

Gene:
CPNE3
Ensembl Gene ID:
ENSAPLG00000015617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016308
130087049 - 130108012
20964