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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130089583_130090459_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130089583 - 130090459
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
TATTTAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTATTTAAAT
Flanking Amino Acid:
EVEARKLDNKDFFGKSDPYL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74
0.54
1
67.6
41.6
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
67.5
0.63
1.6
83.3
37.1

Associated Gene:

Gene:
CPNE3
Ensembl Gene ID:
ENSAPLG00000015617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016308
130087049 - 130108012
20964