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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130090544_130092151_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130090544 - 130092151
Intron Length:
1608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
GNWVMVHRTEVIKNNLNPVW
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
CPNE3
Ensembl Gene ID:
ENSAPLG00000015617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016308
130087049 - 130108012
20964