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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130099957_130100401_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130099957 - 130100401
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAAAA
Flanking Amino Acid:
SVGMVIQDYDTDKMFPAFGF
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
87.9
29.3
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
86.1
0.81
0.7
85.1
29.7
Minor 5ss
47.5
-0.2
2.8
66.5
37.9
Minor BPS
70.9
0.65
1.5
81.75
32.8

Associated Gene:

Gene:
CPNE3
Ensembl Gene ID:
ENSAPLG00000015617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016308
130087049 - 130108012
20964