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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130114324_130116323_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
130114324 - 130116323
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTCCTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTGTTCTCATTC
Flanking Amino Acid:
DSEKLLMKKAKVLLKEKGKP
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.8
39.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.2
0.7
0.8
72.8
37.5
Minor 5ss
44.7
-0.6
2.8
60.1
38.2
Minor BPS
48.5
-0.1
1.8
58.69
40.8

Associated Gene:

Gene:
CNGB3
Ensembl Gene ID:
ENSAPLG00000015533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016188
130112710 - 130146814
34105