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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130124967_130126772_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130124967 - 130126772
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
CTGATGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TAATCTGTAAAC
Flanking Amino Acid:
VFVFSSLIGQMRDVIGAATA
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
75.5
0.57
1
68.7
41.9
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
51.4
0.02
2.1
65.7
39.6

Associated Gene:

Gene:
CNGB3
Ensembl Gene ID:
ENSAPLG00000015533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016188
130112710 - 130146814
34105