Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130134315_130136877_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

130134315 - 130136877

Intron Length:

2563

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGACTTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTCAT

U12 Branch Point Sequence:

TCATCTGCAATT

Flanking Amino Acid:

EAILDKAYIYRVIRTTGYLL

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

0.67

1.1

77.7

37.1

Major PPT

0.63

0.9

72.8

37.4

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

-0

2.2

68.4

43.2

Associated Gene:

Gene:

CNGB3

Ensembl Gene ID:

ENSAPLG00000015533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016188

130112710 - 130146814

34105