About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130136943_130138805_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130136943 - 130138805
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCACTTATTT
Flanking Amino Acid:
PAFRANRMLKHNTFFEFNDR
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
81.3
0.7
0.9
79
34
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
62.1
0.46
1.8
82.67
38.5

Associated Gene:

Gene:
CNGB3
Ensembl Gene ID:
ENSAPLG00000015533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016188
130112710 - 130146814
34105