About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130140747_130143132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
130140747 - 130143132
Intron Length:
2386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCCTTTCATC
Flanking Amino Acid:
VQFLKGGDIISDKVEMKKFY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.7
0.44
0.8
63.6
32
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
56.9
0.2
1.7
67.01
39.4

Associated Gene:

Gene:
CNGB3
Ensembl Gene ID:
ENSAPLG00000015533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016188
130112710 - 130146814
34105