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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130143342_130143923_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130143342 - 130143923
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTCATTATTT
Flanking Amino Acid:
QLPDSIDSYTDRRYVAWLML
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
58.7
0.35
1.8
77.1
39.2

Associated Gene:

Gene:
CNGB3
Ensembl Gene ID:
ENSAPLG00000015533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016188
130112710 - 130146814
34105