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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130260060_130264629_R

Intron Information:

Intron Rank:
153939
Intron Class:
major
Intron Phase:
Intron Coordinates:
130260060 - 130264629
Intron Length:
4570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATTG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTATATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.5
36.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
44
-0.7
3.1
61
43.6
Minor BPS
52.8
0.17
2.1
82.23
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030304
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017714
130259042 - 130440127
181086