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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130264775_130360609_R

Intron Information:

Intron Rank:
153940
Intron Class:
major
Intron Phase:
Intron Coordinates:
130264775 - 130360609
Intron Length:
95835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACCTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
67.3
0.62
1.2
72.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030304
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017714
130259042 - 130440127
181086