Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13033090_13038101_R

Intron Information:

Intron Rank:

140702

Intron Class:

major

Intron Phase:

Intron Coordinates:

13033090 - 13038101

Intron Length:

5012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGGAAA

U12 Branch Point Sequence:

TTTTTTTTTTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.5

27.9

Major BPS

44.1

-0.3

1.5

47.4

44.6

Major PPT

94.8

1.01

0.5

92.6

17.3

Minor 5ss

36.8

-1.5

3.4

53.7

43.8

Minor BPS

43.9

-0.3

3.5

78.47

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042669

13032646 - 13040326

7681

ENSAPLT00000026923

13032646 - 13039265

6620