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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_130352481_130371847_F

Intron Information:

Intron Rank:
139678
Intron Class:
major
Intron Phase:
Intron Coordinates:
130352481 - 130371847
Intron Length:
19367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTCA
5'SS Class:
major
3'SS Sequence:
TATGATGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CATAATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
70.5
36.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
65.1
0.34
1
55.4
45.1
Minor 5ss
39.2
-1.2
3
50.7
45.7
Minor BPS
52.7
0.16
1.7
68.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029312
130351722 - 130373142
21421